MolNFT v1 · #59147 · protein
Crystal structure of the mouse pd-1 mutant and pd-L2 complex
3BP6 · Programmed cell death protein 1: “Crystal structure of the mouse pd-1 mutant and pd-L2 complex”. X-ray diffraction. MolNFT v1 #59147 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3BP6
- Type
- protein
- Length
- 298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Programmed cell death protein 1; Programmed cell death 1 ligand 2
- UniProt
- Q02242, Q9WUL5
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Programmed cell death protein 1 | protein | 112 | 3% helix, 56% strand | Q02242 |
| B | Programmed cell death 1 ligand 2 | protein | 186 | 5% helix, 55% strand | Q9WUL5 |
Ligands and binding sites
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 879 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 3BP6 · Crystal structure of the mouse PD-1 Mutant and PD-L2 complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q02242 · AlphaFold monomer V2.0 prediction for programmed cell death protein 1 (Q02242) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q9WUL5 · AlphaFold monomer V2.0 prediction for programmed cell death 1 ligand 2 (Q9WUL5) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02242
- Every structure of UniProt Q9WUL5
- Elsewhere: RCSB PDB 3BP6 · PDBe 3BP6 · UniProt Q02242 · UniProt Q9WUL5
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