MolNFT v1 · #59125 · protein
Snow flea antifreeze protein quasi-racemate
3BOG · 6.5 kda glycine-rich antifreeze protein: “Snow flea antifreeze protein quasi-racemate”. X-ray diffraction, 1 ligand (UNL). MolNFT v1 #59125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3BOG
- Type
- protein
- Length
- 324 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 6.5 kda glycine-rich antifreeze protein
- UniProt
- Q38PT6
- Ligands
- UNL
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 6.5 kda glycine-rich antifreeze protein | protein | 81 | 0% helix, 5% strand | Q38PT6 |
| C, D | 6.5 kda glycine-rich antifreeze protein | protein | 81 | 0% helix, 5% strand | Q38PT6 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–C · 632 Ų buried · 14 hydrogen bonds · protein-protein
- B–D · 584 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 358 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 88 d-amino, 8 disulfide, 2 modified (D-amino acid, disulfide, nonstandard).
Compared structures
- 3BOG · Snow Flea Antifreeze Protein Quasi-racemate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38PT6
- Elsewhere: RCSB PDB 3BOG · PDBe 3BOG · UniProt Q38PT6
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