MolNFT v1 · #59097 · RNA

Crystal structure of the homo sapiens mitochondrial ribosomal decoding site (br-derivative)

3BNO · A site of human mitochondrial ribosome: “Crystal structure of the homo sapiens mitochondrial ribosomal decoding site (br-derivative)”. X-ray diffraction, 4 pockets (best druggability 0.53). MolNFT v1 #59097 on GenesisL1: 3D…

PDB: 3BNO
Type: RNA
Length: 84 nucleotides
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: A site of human mitochondrial ribosome
Pockets: 4 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	A site of human mitochondrial ribosome	rna	21	—	—

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	337	0.53	0.74	21	empty
2	312	0.49	0.73	22	empty
3	280	0.47	0.73	22	empty
4	90	0.29	0.72	11	empty

Interfaces

4 interfaces between chains.

A–B · 844 Å² buried · 81 hydrogen bonds · nucleic-nucleic
C–D · 843 Å² buried · 78 hydrogen bonds · nucleic-nucleic
A–D · 132 Å² buried · 5 hydrogen bonds · nucleic-nucleic
A–C · 30 Å² buried · 0 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 4 modified (nucleotide modification).

Compared structures

3BNO · Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3BNO · PDBe 3BNO

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.