MolNFT v1 · #59096 · RNA
Crystal structure of the homo sapiens mitochondrial ribosomal decoding site
3BNN · A site of human ribosome: “Crystal structure of the homo sapiens mitochondrial ribosomal decoding site”. X-ray diffraction, 4 pockets (best druggability 0.52). MolNFT v1 #59096 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3BNN
- Type
- RNA
- Length
- 84 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A site of human ribosome
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | A site of human ribosome | rna | 21 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 375 | 0.52 | 0.74 | 22 | empty |
| 2 | 323 | 0.50 | 0.74 | 22 | empty |
| 3 | 211 | 0.43 | 0.73 | 18 | empty |
| 4 | 93 | 0.34 | 0.74 | 12 | empty |
Interfaces
3 interfaces between chains.
- A–B · 869 Ų buried · 85 hydrogen bonds · nucleic-nucleic
- C–D · 866 Ų buried · 80 hydrogen bonds · nucleic-nucleic
- A–D · 133 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 3BNN · Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3BNN · PDBe 3BNN
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