MolNFT v1 · #59081 · protein
Crystal structure of a putative sterol carrier protein type 2 (AF1534) from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution
3BN8 · Putative sterol carrier protein 2: “Crystal structure of a putative sterol carrier protein type 2 (AF1534) from archaeoglobus fulgidus dsm 4304…”. X-ray diffraction, 1 ligand (UNL), 2 pockets (best druggability 0.42). MolNFT v1…
- PDB
- 3BN8
- Type
- protein
- Length
- 226 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative sterol carrier protein 2
- UniProt
- O28738
- Ligands
- UNL
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative sterol carrier protein 2 | protein | 116 | 42% helix, 22% strand | O28738 |
| B | Putative sterol carrier protein 2 | protein | 110 | 42% helix, 24% strand | O28738 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.42 | 0.74 | 19 | empty |
| 2 | 126 | 0.40 | 0.74 | 20 | UNL |
Interfaces
1 interface between chains.
- A–B · 497 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 3BN8 · Crystal structure of a putative sterol carrier protein type 2 (af1534) from archaeoglobus… · the same entry in another collection · chain A against A, TM-score 1.00
- 3CNU · Crystal structure of the predicted coding region AF_1534 from Archaeoglobus fulgidus · a predicted model of the same protein · chain B against A, TM-score 0.98
- 3CNU · Crystal structure of the predicted coding region AF_1534 from archaeoglobus fulgidus · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O28738
- Elsewhere: RCSB PDB 3BN8 · PDBe 3BN8 · UniProt O28738
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