MolNFT v1 · #58942 · protein
Crystal structure of yeast SPT16 N-terminal domain
3BIP · Fact complex subunit SPT16: “Crystal structure of yeast SPT16 N-terminal domain”. X-ray diffraction, 8 pockets (best druggability 0.70). MolNFT v1 #58942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3BIP
- Type
- protein
- Length
- 886 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fact complex subunit SPT16
- UniProt
- P32558
- Pockets
- 8 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fact complex subunit SPT16 | protein | 444 | 43% helix, 20% strand | P32558 |
| B | Fact complex subunit SPT16 | protein | 442 | 42% helix, 22% strand | P32558 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 476 | 0.70 | 0.81 | 87 | empty |
| 2 | 726 | 0.69 | 0.77 | 59 | empty |
| 3 | 259 | 0.61 | 0.80 | 46 | empty |
| 4 | 135 | 0.59 | 0.84 | 23 | empty |
| 5 | 101 | 0.46 | 0.79 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 597 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32558
- Elsewhere: RCSB PDB 3BIP · PDBe 3BIP · UniProt P32558
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