MolNFT v1 · #58908 · protein
Crystal structure of UPF0291 protein ynzc from bacillus subtilis at resolution 2.0 a. northeast structural genomics consortium target SR384
3BHP: “Crystal structure of UPF0291 protein ynzc from bacillus subtilis at resolution 2.0 a. northeast structural…”. X-ray diffraction, 1 pocket (best druggability 0.77). MolNFT v1 #58908 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3BHP
- Type
- protein
- Length
- 154 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0291 protein ynzc
- UniProt
- O31818
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 3 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0291 protein ynzc | protein | 52 | 79% helix, 0% strand | O31818 |
| B | UPF0291 protein ynzc | protein | 48 | 77% helix, 0% strand | O31818 |
| C | UPF0291 protein ynzc | protein | 54 | 69% helix, 0% strand | O31818 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.77 | 0.95 | 27 | empty |
Interfaces
3 interfaces between chains.
- A–B · 757 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 705 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 670 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3BHP · Crystal structure of UPF0291 protein ynzC from Bacillus subtilis at resolution 2.0 A.… · the same entry in another collection · chain A against A, TM-score 1.00
- O31818 · AlphaFold monomer V2.0 prediction for UPF0291 protein ynzc (O31818) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31818
- Elsewhere: RCSB PDB 3BHP · PDBe 3BHP · UniProt O31818
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