MolNFT v1 · #58842 · protein
Crystal structure of ig-like C2-type 2 domain of the human mucosa-associated lymphoid tissue lymphoma translocation protein 1
3BFO · Mucosa-associated lymphoid tissue lymphoma translocation…: “Crystal structure of ig-like C2-type 2 domain of the human mucosa-associated lymphoid tissue lymphoma…”. X-ray diffraction, 1 pocket (best druggability 0.75). MolNFT v1…
- PDB
- 3BFO
- Type
- protein
- Length
- 340 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2)
- EC
- 3.4.22.-
- UniProt
- Q9UDY8
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2) (EC 3.4.22.-) | protein | 85 | 4% helix, 49% strand | Q9UDY8 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1104 | 0.75 | 0.78 | 68 | empty |
Interfaces
6 interfaces between chains.
- A–D · 467 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 340 Ų buried · 5 hydrogen bonds · protein-protein
- B–D · 200 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 112 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 88 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3BFO · Crystal structure of Ig-like C2-type 2 domain of the human Mucosa-associated lymphoid… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UDY8 · AlphaFold monomer V2.0 prediction for mucosa-associated lymphoid tissue lymphoma… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UDY8
- Elsewhere: RCSB PDB 3BFO · PDBe 3BFO · UniProt Q9UDY8
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