MolNFT v1 · #58779 · protein

Crystal structure of fatty acid-binding protein-like YCF58 from thermosynecoccus elongatus. northeast structural genomics consortium target TER13.

3BDR · YCF58 protein: “Crystal structure of fatty acid-binding protein-like YCF58 from thermosynecoccus elongatus. northeast…”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.69). MolNFT v1 #58779 on GenesisL1: 3D…

PDB: 3BDR
Type: protein
Length: 156 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: YCF58 protein
UniProt: Q8DI91
Ligands: PO4
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 58% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	YCF58 protein	protein	156	11% helix, 58% strand	Q8DI91

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	471	0.69	0.79	45	PO4

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3BDR · Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus… · the same entry in another collection · chain A against A, TM-score 1.00
Q8DI91 · AlphaFold monomer V2.0 prediction for chromophore lyase CPCS/CPES (Q8DI91) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DI91
Elsewhere: RCSB PDB 3BDR · PDBe 3BDR · UniProt Q8DI91

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