MolNFT v1 · #58753 · protein
Structure of the cro protein from putative prophage element xfaso 1 in xylella fastidiosa strain ann-1
3BD1: “Structure of the cro protein from putative prophage element xfaso 1 in xylella fastidiosa strain ann-1”. X-ray diffraction, 2 ligands (SO4, CL). MolNFT v1 #58753 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3BD1
- Type
- protein
- Length
- 192 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cro protein
- UniProt
- Q3R0L1
- Ligands
- SO4, CL
Structure
x-ray diffraction · 3 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cro protein | protein | 65 | 63% helix, 0% strand | Q3R0L1 |
| B | Cro protein | protein | 63 | 65% helix, 0% strand | Q3R0L1 |
| C | Cro protein | protein | 64 | 70% helix, 0% strand | Q3R0L1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains C
- CL · Chloride ion · ion · chains C
- GOL · Glycerol · additive · 4 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–C · 451 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 305 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3BD1 · Structure of the Cro protein from putative prophage element Xfaso 1 in Xylella fastidiosa… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3R0L1
- Elsewhere: RCSB PDB 3BD1 · PDBe 3BD1 · UniProt Q3R0L1
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