MolNFT v1 · #58747 · protein
Crystal structure of a putative glycosyltransferase from bacteroides fragilis
3BCV · Putative glycosyltransferase protein: “Crystal structure of a putative glycosyltransferase from bacteroides fragilis”. X-ray diffraction, 2 pockets (best druggability 0.58). MolNFT v1 #58747 on GenesisL1: 3D structure, binding sites…
- PDB
- 3BCV
- Type
- protein
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative glycosyltransferase protein
- UniProt
- Q5LBM4
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative glycosyltransferase protein | protein | 196 | 41% helix, 18% strand | Q5LBM4 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 239 | 0.58 | 0.79 | 32 | empty |
| 2 | 189 | 0.51 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 1012 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3BCV · Crystal structure of a putative glycosyltransferase from Bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LBM4
- Elsewhere: RCSB PDB 3BCV · PDBe 3BCV · UniProt Q5LBM4
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