MolNFT v1 · #58665 · protein
Crystal structure of D70A/H93G mutant of human acidic fibroblast growth factor
3BAD · Heparin-binding growth factor 1: “Crystal structure of D70A/H93G mutant of human acidic fibroblast growth factor”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.61). MolNFT v1 #58665 on GenesisL1: 3D structure…
- PDB
- 3BAD
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heparin-binding growth factor 1
- UniProt
- P05230
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heparin-binding growth factor 1 | protein | 131 | 9% helix, 40% strand | P05230 |
| B | Heparin-binding growth factor 1 | protein | 129 | 7% helix, 39% strand | P05230 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.61 | 0.78 | 34 | empty |
| 2 | 136 | 0.41 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 465 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3BAD · Crystal structure of D70A/H93G mutant of Human acidic fibroblast growth factor · the same entry in another collection · chain A against A, TM-score 1.00
- P05230 · AlphaFold monomer V2.0 prediction for fibroblast growth factor 1 (P05230) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05230
- Elsewhere: RCSB PDB 3BAD · PDBe 3BAD · UniProt P05230
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