MolNFT v1 · #58608 · protein
Crystal structure of wild-type chitinase a from vibrio harveyi
3B8S: “Crystal structure of wild-type chitinase a from vibrio harveyi”. X-ray diffraction, 10 pockets (best druggability 0.75). MolNFT v1 #58608 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3B8S
- Type
- protein
- Length
- 1,134 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase a
- EC
- 3.2.1.14
- UniProt
- Q9AMP1
- Pockets
- 10 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chitinase a (EC 3.2.1.14) | protein | 567 | 31% helix, 24% strand | Q9AMP1 |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 790 | 0.75 | 0.80 | 84 | empty |
| 2 | 872 | 0.74 | 0.78 | 83 | empty |
| 3 | 395 | 0.63 | 0.78 | 50 | empty |
| 4 | 184 | 0.49 | 0.76 | 29 | empty |
| 5 | 163 | 0.44 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 351 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3B8S · Crystal structure of wild-type chitinase A from Vibrio harveyi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AMP1
- Elsewhere: RCSB PDB 3B8S · PDBe 3B8S · UniProt Q9AMP1
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