MolNFT v1 · #58374 · protein

Structure of burkholderia thailandensis nucleoside kinase (bthnk) in complex with ADP-inosine

3B1P · Ribokinase, putative: “Structure of burkholderia thailandensis nucleoside kinase (bthnk) in complex with ADP-inosine”. X-ray diffraction, 3 ligands (NOS, ADP, NA), 2 pockets (best druggability 0.75). MolNFT v1 #58374 on GenesisL1…

PDB: 3B1P
Type: protein
Length: 319 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribokinase, putative
EC: 2.7.1.143
UniProt: Q2SZE4
Ligands: NOS, ADP, NA
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribokinase, putative (EC 2.7.1.143)	protein	319	40% helix, 22% strand	Q2SZE4

Ligands and binding sites

NOS · Inosine · ligand · chains A
ADP · Adenosine-5'-diphosphate · ligand · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	524	0.75	0.83	62	NOS, ADP
2	56	0.34	0.78	14	empty

Compared structures

3B1P · Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2SZE4
Elsewhere: RCSB PDB 3B1P · PDBe 3B1P · UniProt Q2SZE4

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