MolNFT v1 · #58373 · protein

Structure of burkholderia thailandensis nucleoside kinase (bthnk) in ligand-free form

3B1O · Ribokinase, putative: “Structure of burkholderia thailandensis nucleoside kinase (bthnk) in ligand-free form”. X-ray diffraction, 5 pockets (best druggability 0.82). MolNFT v1 #58373 on GenesisL1: 3D structure, binding sites and…

PDB: 3B1O
Type: protein
Length: 616 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribokinase, putative
EC: 2.7.1.143
UniProt: Q2SZE4
Pockets: 5 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribokinase, putative (EC 2.7.1.143)	protein	313	40% helix, 24% strand	Q2SZE4
B	Ribokinase, putative (EC 2.7.1.143)	protein	303	38% helix, 26% strand	Q2SZE4

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	907	0.82	0.84	73	empty
2	51	0.73	1.00	16	empty
3	421	0.60	0.76	51	empty
4	156	0.58	0.82	26	empty
5	51	0.36	0.80	10	empty

Interfaces

1 interface between chains.

A–B · 1724 Å² buried · 27 hydrogen bonds · protein-protein

Compared structures

3B1O · Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in ligand-free form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2SZE4
Elsewhere: RCSB PDB 3B1O · PDBe 3B1O · UniProt Q2SZE4

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