MolNFT v1 · #58217 · protein

Crystal structure of D-serine dehydratase from chicken kidney (edta treated)

3AWN: “Crystal structure of D-serine dehydratase from chicken kidney (edta treated)”. X-ray diffraction, 1 ligand (PLP), 3 pockets (best druggability 0.52). MolNFT v1 #58217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3AWN
Type: protein
Length: 368 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-serine dehydratase
EC: 4.3.1.18
UniProt: A9CP13
Ligands: PLP
Pockets: 3 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-serine dehydratase (EC 4.3.1.18)	protein	368	36% helix, 25% strand	A9CP13

Ligands and binding sites

PLP · Pyridoxal-5'-phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.52	0.82	22	PLP
2	68	0.31	0.75	21	empty
3	55	0.27	0.74	15	empty

Modifications

Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).

Compared structures

3AWN · Crystal structure of D-serine dehydratase from chicken kidney (EDTA treated) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A9CP13
Elsewhere: RCSB PDB 3AWN · PDBe 3AWN · UniProt A9CP13

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