MolNFT v1 · #58125 · protein

Crystal structure of human HSP70 nbd in the ADP- and mg ion-bound state

3ATU · Heat shock 70 kda protein 1A/1B: “Crystal structure of human HSP70 nbd in the ADP- and mg ion-bound state”. X-ray diffraction, 4 ligands (ADP, MG, NA), 1 pocket (best druggability 0.77). MolNFT v1 #58125 on GenesisL1: 3D structure…

PDB: 3ATU
Type: protein
Length: 379 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Heat shock 70 kda protein 1A/1B
UniProt: P08107
Ligands: ADP, MG, NA, PO4
Pockets: 1 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Heat shock 70 kda protein 1A/1B	protein	379	41% helix, 28% strand	P08107

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
NA · Sodium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A
PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	675	0.77	0.82	72	ADP, PO4, MG, NA

Compared structures

3ATU · Crystal structure of human Hsp70 NBD in the ADP- and Mg ion-bound state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08107
Elsewhere: RCSB PDB 3ATU · PDBe 3ATU · UniProt P08107

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