MolNFT v1 · #58031 · protein
Crystal structure of bombyx mori beta-GRP/GNBP3 N-terminal domain with laminarihexaoses
3AQX · Beta-1,3-glucan-binding protein: “Crystal structure of bombyx mori beta-GRP/GNBP3 N-terminal domain with laminarihexaoses”. X-ray diffraction, 1 ligand (BGC), 1 pocket (best druggability 0.28). MolNFT v1 #58031 on GenesisL1: 3D…
- PDB
- 3AQX
- Type
- protein
- Length
- 201 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-1,3-glucan-binding protein
- UniProt
- Q9NL89
- Ligands
- BGC
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-1,3-glucan-binding protein | protein | 101 | 0% helix, 53% strand | Q9NL89 |
| B | Beta-1,3-glucan-binding protein | protein | 100 | 0% helix, 54% strand | Q9NL89 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.28 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 300 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3AQX · Crystal structure of Bombyx mori beta-GRP/GNBP3 N-terminal domain with laminarihexaoses · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NL89 · AlphaFold monomer V2.0 prediction for beta-1,3-glucan-binding protein (Q9NL89) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NL89
- Elsewhere: RCSB PDB 3AQX · PDBe 3AQX · UniProt Q9NL89
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