MolNFT v1 · #58020 · protein
Structure of bacterial protein (apo form I)
3AQK · POLY(A) polymerase: “Structure of bacterial protein (apo form I)”. X-ray diffraction, 6 pockets (best druggability 0.71). MolNFT v1 #58020 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3AQK
- Type
- protein
- Length
- 390 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLY(A) polymerase
- EC
- 2.7.7.19
- UniProt
- C9QS13
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLY(A) polymerase (EC 2.7.7.19) | protein | 390 | 58% helix, 6% strand | C9QS13 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.71 | 0.98 | 20 | empty |
| 2 | 116 | 0.69 | 0.90 | 21 | empty |
| 3 | 566 | 0.68 | 0.78 | 54 | empty |
| 4 | 75 | 0.57 | 0.88 | 22 | empty |
| 5 | 84 | 0.46 | 0.81 | 20 | empty |
Compared structures
- 3AQK · Structure of bacterial protein (apo form I) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C9QS13
- Elsewhere: RCSB PDB 3AQK · PDBe 3AQK · UniProt C9QS13
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