MolNFT v1 · #57991 · protein
Crystal structure of J-TRX1 fragment of ERDJ5
3APQ · Dnaj homolog subfamily C member 10: “Crystal structure of J-TRX1 fragment of ERDJ5”. X-ray diffraction, 5 pockets (best druggability 0.74). MolNFT v1 #57991 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3APQ
- Type
- protein
- Length
- 409 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dnaj homolog subfamily C member 10
- UniProt
- Q9DC23
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dnaj homolog subfamily C member 10 | protein | 208 | 48% helix, 11% strand | Q9DC23 |
| B | Dnaj homolog subfamily C member 10 | protein | 201 | 48% helix, 11% strand | Q9DC23 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 951 | 0.74 | 0.77 | 117 | empty |
| 2 | 150 | 0.56 | 0.82 | 25 | empty |
| 3 | 138 | 0.55 | 0.82 | 28 | empty |
| 4 | 53 | 0.34 | 0.79 | 19 | empty |
| 5 | 50 | 0.30 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 693 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9DC23
- Elsewhere: RCSB PDB 3APQ · PDBe 3APQ · UniProt Q9DC23
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