MolNFT v1 · #57989 · protein

Crystal structure of full-length ERDJ5

3APO · Dnaj homolog subfamily C member 10: “Crystal structure of full-length ERDJ5”. X-ray diffraction, 11 pockets (best druggability 0.78). MolNFT v1 #57989 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3APO
Type: protein
Length: 688 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dnaj homolog subfamily C member 10
UniProt: Q9DC23
Pockets: 11 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dnaj homolog subfamily C member 10	protein	688	38% helix, 22% strand	Q9DC23

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	829	0.78	0.81	66	empty
2	232	0.66	0.84	40	empty
3	183	0.58	0.81	41	empty
4	107	0.54	0.83	29	empty
5	133	0.47	0.77	22	empty

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

3APO · Crystal structure of full-length ERdj5 · the same entry in another collection · chain A against A, TM-score 1.00
Q9DC23 · AlphaFold monomer V2.0 prediction for dnaj homolog subfamily C member 10 (Q9DC23) · a predicted model of the same protein · chain A against A, TM-score 0.71

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9DC23
Elsewhere: RCSB PDB 3APO · PDBe 3APO · UniProt Q9DC23

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