MolNFT v1 · #5795 · protein
Crystal structure of the superantigen smez-2 from streptococcus pyogenes
1ET6: “Crystal structure of the superantigen smez-2 from streptococcus pyogenes”. X-ray diffraction, 2 pockets (best druggability 0.33). MolNFT v1 #5795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ET6
- Type
- protein
- Length
- 402 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superantigen smez-2
- UniProt
- Q9RQQ5
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Superantigen smez-2 | protein | 201 | 20% helix, 41% strand | Q9RQQ5 |
| B | Superantigen smez-2 | protein | 201 | 19% helix, 41% strand | Q9RQQ5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.33 | 0.78 | 18 | empty |
| 2 | 55 | 0.30 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 100 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 1ET6 · Crystal structure of the superantigen smez-2 from streptococcus pyogenes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RQQ5
- Elsewhere: RCSB PDB 1ET6 · PDBe 1ET6 · UniProt Q9RQQ5
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