MolNFT v1 · #57942 · protein
Crystal structure of D-serine dehydratase from chicken kidney
3ANU: “Crystal structure of D-serine dehydratase from chicken kidney”. X-ray diffraction, 3 ligands (PLP, ZN, CL), 1 pocket (best druggability 0.54). MolNFT v1 #57942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3ANU
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-serine dehydratase
- EC
- 4.3.1.18
- UniProt
- A9CP13
- Ligands
- PLP, ZN, CL
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-serine dehydratase (EC 4.3.1.18) | protein | 367 | 36% helix, 25% strand | A9CP13 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.54 | 0.79 | 39 | PLP, ZN |
Modifications
Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).
Compared structures
- 3ANU · Crystal structure of D-serine dehydratase from chicken kidney · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9CP13
- Elsewhere: RCSB PDB 3ANU · PDBe 3ANU · UniProt A9CP13
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