MolNFT v1 · #5794 · protein
Crystal structure of nitrite reductase ASP98ASN mutant from alcaligenes faecalis S-6
1ET5: “Crystal structure of nitrite reductase ASP98ASN mutant from alcaligenes faecalis S-6”. X-ray diffraction, 2 ligands (CU, ZN), 2 pockets (best druggability 0.71). MolNFT v1 #5794 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1ET5
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrite reductase
- EC
- 1.7.99.3
- UniProt
- P38501
- Ligands
- CU, ZN
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrite reductase (EC 1.7.99.3) | protein | 336 | 11% helix, 40% strand | P38501 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.71 | 0.98 | 18 | empty |
| 2 | 76 | 0.44 | 0.81 | 17 | empty |
Compared structures
- 1ET5 · Crystal structure of nitrite reductase ASP98ASN mutant from alcaligenes faecalis S-6 · the same entry in another collection · chain A against A, TM-score 1.00
- P38501 · AlphaFold monomer V2.0 prediction for copper-containing nitrite reductase (P38501) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38501
- Elsewhere: RCSB PDB 1ET5 · PDBe 1ET5 · UniProt P38501
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