MolNFT v1 · #57911 · protein
Structure of the starch branching enzyme I (bei) from oryza sativa L
3AML · OS06G0726400 protein: “Structure of the starch branching enzyme I (bei) from oryza sativa L”. X-ray diffraction, 9 pockets (best druggability 0.68). MolNFT v1 #57911 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3AML
- Type
- protein
- Length
- 693 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OS06G0726400 protein
- UniProt
- Q0D9D0
- Pockets
- 9 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | OS06G0726400 protein | protein | 693 | 33% helix, 23% strand | Q0D9D0 |
Ligands and binding sites
- GOL · Glycerol · additive · 32 copies · chains A
- BME · Beta-mercaptoethanol · additive · 2 copies · chains A
- SIN · Succinic acid · additive · 2 copies · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 445 | 0.68 | 0.80 | 50 | GOL |
| 2 | 231 | 0.59 | 0.80 | 30 | BME, SIN |
| 3 | 122 | 0.43 | 0.77 | 18 | GOL |
| 4 | 55 | 0.41 | 0.82 | 17 | empty |
| 5 | 52 | 0.34 | 0.78 | 13 | empty |
Modifications
Observed in the structure: 2 covalent (additive adduct).
Compared structures
- 3AML · Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0D9D0
- Elsewhere: RCSB PDB 3AML · PDBe 3AML · UniProt Q0D9D0
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