MolNFT v1 · #57852 · protein
Crystal structure of xylanase from trichoderma longibrachiatum
3AKP: “Crystal structure of xylanase from trichoderma longibrachiatum”. X-ray diffraction, 2 pockets (best druggability 0.54). MolNFT v1 #57852 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3AKP
- Type
- protein
- Length
- 380 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylanase
- EC
- 3.2.1.8
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Xylanase (EC 3.2.1.8) | protein | 190 | 5% helix, 62% strand | — |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.54 | 0.78 | 32 | GOL |
| 2 | 188 | 0.51 | 0.77 | 29 | GOL |
Modifications
Observed in the structure: 2 modified (cyclization).
Compared structures
- 3AKP · Crystal structure of xylanase from Trichoderma longibrachiatum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3AKP · PDBe 3AKP
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.