MolNFT v1 · #57623 · protein
Refined structure of porcine cytosolic adenylate kinase at 2.1 ångströms resolution
3ADK: “Refined structure of porcine cytosolic adenylate kinase at 2.1 ångströms resolution”. X-ray diffraction, 2 ligands (ACE, SO4), 1 pocket (best druggability 0.57). MolNFT v1 #57623 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3ADK
- Type
- protein
- Length
- 194 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenylate kinase
- EC
- 2.7.4.3
- UniProt
- P00571
- Ligands
- ACE, SO4
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenylate kinase (EC 2.7.4.3) | protein | 194 | 55% helix, 13% strand | P00571 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.57 | 0.77 | 39 | SO4 |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3ADK · Refined structure of porcine cytosolic adenylate kinase at 2.1 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P00571 · AlphaFold monomer V2.0 prediction for adenylate kinase isoenzyme 1 (P00571) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00571
- Elsewhere: RCSB PDB 3ADK · PDBe 3ADK · UniProt P00571
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