MolNFT v1 · #57335 · protein

Crystal structure of gmp synthetase PH1347 from pyrococcus horikoshii OT3

3A4I · Gmp synthase [glutamine-hydrolyzing] subunit B: “Crystal structure of gmp synthetase PH1347 from pyrococcus horikoshii OT3”. X-ray diffraction, 6 pockets (best druggability 0.61). MolNFT v1 #57335 on GenesisL1: 3D structure, binding…

PDB: 3A4I
Type: protein
Length: 572 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gmp synthase [glutamine-hydrolyzing] subunit B
EC: 6.3.5.2
UniProt: O59072
Pockets: 6 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Gmp synthase [glutamine-hydrolyzing] subunit B (EC 6.3.5.2)	protein	286	45% helix, 22% strand	O59072

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	309	0.61	0.78	30	empty
2	301	0.59	0.78	31	empty
3	300	0.57	0.76	41	empty
4	261	0.54	0.76	37	empty
5	96	0.34	0.73	23	empty

Interfaces

1 interface between chains.

A–B · 1594 Å² buried · 25 hydrogen bonds · protein-protein

Compared structures

3A4I · Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3 · the same entry in another collection · chain A against A, TM-score 1.00
O59072 · AlphaFold monomer V2.0 prediction for gmp synthase [glutamine- hydrolyzing] subunit B… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59072
Elsewhere: RCSB PDB 3A4I · PDBe 3A4I · UniProt O59072

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