MolNFT v1 · #57307 · protein

Crystal structures of penicillin binding protein 5 from haemophilus influenzae

3A3J · PBP5: “Crystal structures of penicillin binding protein 5 from haemophilus influenzae”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.51). MolNFT v1 #57307 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3A3J
Type: protein
Length: 344 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PBP5
EC: 3.4.16.4
Ligands: SO4
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PBP5 (EC 3.4.16.4)	protein	344	29% helix, 33% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	166	0.51	0.78	31	SO4

Compared structures

3A3J · Crystal structures of penicillin binding protein 5 from Haemophilus influenzae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3A3J · PDBe 3A3J

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