MolNFT v1 · #57299 · protein
Crystal structure of lump complexed with flavin mononucleotide
3A3B · Lumazine protein: “Crystal structure of lump complexed with flavin mononucleotide”. X-ray diffraction, 2 ligands (FMN, RBF), 3 pockets (best druggability 0.68). MolNFT v1 #57299 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3A3B
- Type
- protein
- Length
- 352 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lumazine protein
- UniProt
- C4TPG1
- Ligands
- FMN, RBF
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Lumazine protein | protein | 177 | 11% helix, 47% strand | C4TPG1 |
| A | Lumazine protein | protein | 175 | 8% helix, 46% strand | C4TPG1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 584 | 0.68 | 0.78 | 53 | RBF |
| 2 | 87 | 0.39 | 0.78 | 15 | empty |
| 3 | 69 | 0.35 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- B–A · 362 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3A3B · Crystal structure of LumP complexed with flavin mononucleotide · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4TPG1
- Elsewhere: RCSB PDB 3A3B · PDBe 3A3B · UniProt C4TPG1
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