MolNFT v1 · #57293 · protein
Crystal structure of lump complexed with riboflavin
3A35 · Lumazine protein: “Crystal structure of lump complexed with riboflavin”. X-ray diffraction, 1 ligand (RBF), 4 pockets (best druggability 0.71). MolNFT v1 #57293 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3A35
- Type
- protein
- Length
- 368 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lumazine protein
- UniProt
- C4TPG1
- Ligands
- RBF
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lumazine protein | protein | 184 | 9% helix, 46% strand | C4TPG1 |
Ligands and binding sites
- RBF · Riboflavin · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 747 | 0.71 | 0.77 | 67 | RBF |
| 2 | 100 | 0.42 | 0.78 | 18 | empty |
| 3 | 77 | 0.40 | 0.79 | 18 | empty |
| 4 | 95 | 0.38 | 0.76 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 450 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3A35 · Crystal structure of LumP complexed with riboflavin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4TPG1
- Elsewhere: RCSB PDB 3A35 · PDBe 3A35 · UniProt C4TPG1
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