MolNFT v1 · #57211 · protein

Crystal structure of D-glucuronic acid-bound alginate lyase val-1 from chlorella virus

3A0N: “Crystal structure of D-glucuronic acid-bound alginate lyase val-1 from chlorella virus”. X-ray diffraction, 1 ligand (BDP), 1 pocket (best druggability 0.36). MolNFT v1 #57211 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3A0N
Type: protein
Length: 242 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Val-1
EC: 4.2.2.3
UniProt: Q9DTZ2
Ligands: BDP
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Val-1 (EC 4.2.2.3)	protein	242	4% helix, 50% strand	Q9DTZ2

Ligands and binding sites

BDP · beta-D-glucopyranuronic acid · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.36	0.75	27	BDP

Compared structures

3A0N · Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9DTZ2
Elsewhere: RCSB PDB 3A0N · PDBe 3A0N · UniProt Q9DTZ2

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