MolNFT v1 · #57197 · protein
Structure of (PPG)4-oog-(PPG)4, monoclinic, twinned crystal
3A08 · Collagen-like peptide: “Structure of (PPG)4-oog-(PPG)4, monoclinic, twinned crystal”. X-ray diffraction. MolNFT v1 #57197 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3A08
- Type
- protein
- Length
- 141 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen-like peptide
Structure
x-ray diffraction · 5 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Collagen-like peptide | protein | 23 | 0% helix, 0% strand | — |
| C | Collagen-like peptide | protein | 23 | 0% helix, 0% strand | — |
| D | Collagen-like peptide | protein | 25 | 0% helix, 0% strand | — |
| E | Collagen-like peptide | protein | 24 | 0% helix, 0% strand | — |
| F | Collagen-like peptide | protein | 23 | 0% helix, 0% strand | — |
Interfaces
12 interfaces between chains.
- D–E · 717 Ų buried · 8 hydrogen bonds · protein-protein
- D–F · 712 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 692 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 683 Ų buried · 7 hydrogen bonds · protein-protein
- E–F · 681 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (hydroxylation).
Compared structures
- 3A08 · Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3A08 · PDBe 3A08
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