MolNFT v1 · #57182 · DNA
Structural variability and new intermolecular interactions of Z-DNA in crystals of D(PCPGPCPGPCPG)
392D · DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3'): “Structural variability and new intermolecular interactions of Z-DNA in crystals of D(PCPGPCPGPCPG)”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #57182 on GenesisL1: 3D structure, binding sites…
- PDB
- 392D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3')
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 321 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- C–D · 316 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- A–C · 110 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Compared structures
- 392D · Structural variability and new intermolecular interactions of Z-DNA in crystals of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 392D · PDBe 392D
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