MolNFT v1 · #57160 · DNA

Structural variability of a-DNA in crystals of the octamer D(PCPCPCPGPCPGPGPG)

368D · DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3'): “Structural variability of a-DNA in crystals of the octamer D(PCPCPCPGPCPGPGPG)”. X-ray diffraction, 1 pocket (best druggability 0.42). MolNFT v1 #57160 on GenesisL1: 3D structure, binding…

PDB: 368D
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3')
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(PCPCPCPGPCPGPGPG)-3')	dna	8	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.42	0.76	14	empty

Interfaces

1 interface between chains.

A–B · 484 Å² buried · 43 hydrogen bonds · nucleic-nucleic

Compared structures

368D · Structural variability of a-DNA in crystals of the octamer D(PCPCPCPGPCPGPGPG) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 368D · PDBe 368D

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