MolNFT v1 · #57159 · DNA
1.2 a structure determination of the D(CG(5-BRU)ACG)2/5-bromo-9-amino- daca complex
367D · 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3': “1.2 a structure determination of the D(CG(5-BRU)ACG)2/5-bromo-9-amino- daca complex”. X-ray diffraction, 2 ligands (DA5, BR). MolNFT v1 #57159 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 367D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3'
- Ligands
- DA5, BR
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- DA5 · 5-bromo-9-amino-N-ethyl(diaminomethyl)acridine-4-carboxamide · ligand · 3 copies · chains A, B
- BR · Bromide ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 290 Ų buried · 19 hydrogen bonds · nucleic-nucleic
Compared structures
- 367D · 1.2 a structure determination of the D(CG(5-BRU)ACG)2/5-bromo-9-amino-daca complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 367D · PDBe 367D
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