MolNFT v1 · #57153 · RNA
Crystal structure of domain E of thermus flavus 5S rRNA: a helical RNA-structure including a tetraloop
361D · RNA (5'- R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*…: “Crystal structure of domain E of thermus flavus 5S rRNA: a helical RNA-structure including a tetraloop”. X-ray diffraction, 2 pockets (best druggability 0.58). MolNFT…
- PDB
- 361D
- Type
- RNA
- Length
- 40 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'- R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3')
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (5'- R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3') | rna | 20 | — | — |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 454 | 0.58 | 0.75 | 21 | empty |
| 2 | 303 | 0.57 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 230 Ų buried · 10 hydrogen bonds · nucleic-nucleic
Compared structures
- 361D · Crystal structure of domain E of thermus flavus 5S rRNA: a helical RNA-structure… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 361D · PDBe 361D
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