MolNFT v1 · #57129 · DNA
Interaction between left-handed Z-DNA and polyamine-3 the crystal structure of the D(CG)3 and thermospermine complex
336D · DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'): “Interaction between left-handed Z-DNA and polyamine-3 the crystal structure of the D(CG)3 and thermospermine…”. X-ray diffraction, 2 ligands (TER, MG). MolNFT v1 #57129 on GenesisL1: 3D structure…
- PDB
- 336D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
- Ligands
- TER, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- TER · N-(3-amino-propyl)-N-(5-aminopropyl)-1,4-diaminobutane · ligand · 2 copies · chains A
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 321 Ų buried · 21 hydrogen bonds · nucleic-nucleic
Compared structures
- 336D · Interaction between left-handed Z-DNA and polyamine-3 the crystal structure of the D(CG)3… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 336D · PDBe 336D
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