MolNFT v1 · #57094 · DNA
Meta-hydroxy analogue of hoechst 33258 ('hydroxyl out' conformation) bound to D(CGCGAATTCGCG)2
303D · DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3'): “Meta-hydroxy analogue of hoechst 33258 ('hydroxyl out' conformation) bound to D(CGCGAATTCGCG)2”. X-ray diffraction, 2 ligands (RO2, MG). MolNFT v1 #57094 on GenesisL1: 3D…
- PDB
- 303D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3')
- Ligands
- RO2, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3') | dna | 12 | — | — |
Ligands and binding sites
- RO2 · 3-[5-[5-(4-methyl-piperazin-1-yl)-1H-imidazo[4,5-b]pyridin-2-yl]-benzimidazol-2-yl]-phenol · ligand · chains A, B
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 565 Ų buried · 57 hydrogen bonds · nucleic-nucleic
Compared structures
- 303D · Meta-hydroxy analogue of hoechst 33258 ('hydroxyl out' conformation) bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 303D · PDBe 303D
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