MolNFT v1 · #57046 · protein
Crystal structure of CYCLO/MALTODEXTRIN-binding protein complexed with alpha-cyclodextrin
2ZYM · Solute-binding protein: “Crystal structure of CYCLO/MALTODEXTRIN-binding protein complexed with alpha-cyclodextrin”. X-ray diffraction, 1 ligand (GLC), 4 pockets (best druggability 0.68). MolNFT v1 #57046 on GenesisL1: 3D structure…
- PDB
- 2ZYM
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Solute-binding protein
- UniProt
- Q9AJF5
- Ligands
- GLC
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Solute-binding protein | protein | 381 | 47% helix, 19% strand | Q9AJF5 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 534 | 0.68 | 0.78 | 49 | GLC |
| 2 | 124 | 0.44 | 0.77 | 20 | empty |
| 3 | 124 | 0.39 | 0.74 | 20 | empty |
| 4 | 53 | 0.31 | 0.77 | 15 | empty |
Compared structures
- 2ZYM · Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AJF5
- Elsewhere: RCSB PDB 2ZYM · PDBe 2ZYM · UniProt Q9AJF5
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