MolNFT v1 · #57033 · protein
Improved crystal structure of magnesium transporter mgte
2ZY9 · MG2+ transporter mgte: “Improved crystal structure of magnesium transporter mgte”. X-ray diffraction, 1 ligand (MG), 7 pockets (best druggability 0.83). MolNFT v1 #57033 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2ZY9
- Type
- protein
- Length
- 856 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MG2+ transporter mgte
- UniProt
- Q5SMG8
- Ligands
- MG
- Pockets
- 7 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 63% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MG2+ transporter mgte | protein | 427 | 66% helix, 9% strand | Q5SMG8 |
| B | MG2+ transporter mgte | protein | 429 | 60% helix, 8% strand | Q5SMG8 |
Ligands and binding sites
- MG · Magnesium ion · metal · 13 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 960 | 0.83 | 0.84 | 106 | MG |
| 2 | 101 | 0.76 | 0.97 | 29 | MG |
| 3 | 326 | 0.70 | 0.84 | 44 | MG |
| 4 | 68 | 0.52 | 0.86 | 12 | empty |
| 5 | 72 | 0.49 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 4988 Ų buried · 54 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SMG8
- Elsewhere: RCSB PDB 2ZY9 · PDBe 2ZY9 · UniProt Q5SMG8
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