MolNFT v1 · #56981 · protein
Crystal structure of the novel two-domain type laccase from a metagenome
2ZWN: “Crystal structure of the novel two-domain type laccase from a metagenome”. X-ray diffraction, 3 ligands (C2O, CU, CL), 11 pockets (best druggability 0.86). MolNFT v1 #56981 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2ZWN
- Type
- protein
- Length
- 949 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Two-domain type laccase
- Ligands
- C2O, CU, CL
- Pockets
- 11 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Two-domain type laccase | protein | 317 | 7% helix, 45% strand | — |
| B, C | Two-domain type laccase | protein | 316 | 7% helix, 45% strand | — |
Ligands and binding sites
- C2O · Cu-O-Cu linkage · ligand · 3 copies · chains A, B, C
- CU · Copper (II) ion · metal · 6 copies · chains A, C, B
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 392 | 0.86 | 0.94 | 39 | empty |
| 2 | 1098 | 0.82 | 0.83 | 65 | empty |
| 3 | 109 | 0.53 | 0.82 | 19 | empty |
| 4 | 112 | 0.52 | 0.81 | 18 | empty |
| 5 | 111 | 0.52 | 0.81 | 20 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1677 Ų buried · 34 hydrogen bonds · protein-protein
- A–B · 1656 Ų buried · 32 hydrogen bonds · protein-protein
- A–C · 1607 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 2ZWN · Crystal structure of the novel two-domain type laccase from a metagenome · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2ZWN · PDBe 2ZWN
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