MolNFT v1 · #56951 · protein
Crystal structure of a D-tagatose 3-epimerase-related protein from thermotoga maritima
2ZVR · Uncharacterized protein TM_0416: “Crystal structure of a D-tagatose 3-epimerase-related protein from thermotoga maritima”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #56951 on GenesisL1: 3D structure, binding…
- PDB
- 2ZVR
- Type
- protein
- Length
- 521 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein TM_0416
- UniProt
- Q9WYP7
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein TM_0416 | protein | 259 | 49% helix, 15% strand | Q9WYP7 |
| B | Uncharacterized protein TM_0416 | protein | 262 | 50% helix, 15% strand | Q9WYP7 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 347 | 0.67 | 0.81 | 43 | empty |
| 2 | 392 | 0.66 | 0.80 | 42 | empty |
| 3 | 127 | 0.47 | 0.78 | 20 | empty |
| 4 | 67 | 0.29 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 752 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 2ZVR · Crystal structure of a D-tagatose 3-epimerase-related protein from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WYP7 · AlphaFold monomer V2.0 prediction for 5-keto-L-gluconate epimerase (Q9WYP7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYP7
- Elsewhere: RCSB PDB 2ZVR · PDBe 2ZVR · UniProt Q9WYP7
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