MolNFT v1 · #56939 · protein

Form 2 structure (C2221) of TT0207 from thermus thermophilus HB8

2ZVC · Precorrin-3 C17-methyltransferase: “Form 2 structure (C2221) of TT0207 from thermus thermophilus HB8”. X-ray diffraction, 1 ligand (SAH), 1 pocket (best druggability 0.71). MolNFT v1 #56939 on GenesisL1: 3D structure, binding sites…

PDB: 2ZVC
Type: protein
Length: 259 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Precorrin-3 C17-methyltransferase
UniProt: Q53WA6
Ligands: SAH
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Precorrin-3 C17-methyltransferase	protein	259	30% helix, 27% strand	Q53WA6

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.71	0.80	51	SAH

Compared structures

2ZVC · Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53WA6
Elsewhere: RCSB PDB 2ZVC · PDBe 2ZVC · UniProt Q53WA6

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