MolNFT v1 · #56672 · protein

Crystal structure of monomeric kusabira-orange (mko), orange-emitting GFP-like protein, at pH 9.1

2ZMU · Fluorescent protein: “Crystal structure of monomeric kusabira-orange (mko), orange-emitting GFP-like protein, at pH 9.1”. X-ray diffraction, 1 ligand (CFY), 1 pocket (best druggability 0.81). MolNFT v1 #56672 on GenesisL1: 3D…

PDB: 2ZMU
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fluorescent protein
UniProt: Q6I7B2
Ligands: CFY
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 58% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fluorescent protein	protein	213	5% helix, 58% strand	Q6I7B2

Ligands and binding sites

CFY · [(4Z)-2-{(2R)-2-[(1S)-1-amino-2-phenylethyl]-2-hydroxy-2,5-dihydro-1,3-thiazol-4-yl}-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	139	0.81	0.98	38	CFY

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

2ZMU · Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6I7B2
Elsewhere: RCSB PDB 2ZMU · PDBe 2ZMU · UniProt Q6I7B2

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