MolNFT v1 · #56383 · protein

Crystal structure of TTMA177, a hypothetical protein from thermus thermophilus phage tma

2ZDJ · Hypothetical protein TTMA177: “Crystal structure of TTMA177, a hypothetical protein from thermus thermophilus phage tma”. X-ray diffraction, 5 pockets (best druggability 0.81). MolNFT v1 #56383 on GenesisL1: 3D structure, binding…

PDB: 2ZDJ
Type: protein
Length: 276 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein TTMA177
Pockets: 5 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Hypothetical protein TTMA177	protein	69	20% helix, 36% strand	—

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	794	0.81	0.84	83	empty
2	61	0.67	0.95	17	empty
3	54	0.38	0.80	14	empty
4	74	0.37	0.77	15	empty
5	55	0.33	0.77	14	empty

Interfaces

6 interfaces between chains.

C–D · 442 Å² buried · 3 hydrogen bonds · protein-protein
B–D · 432 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 408 Å² buried · 3 hydrogen bonds · protein-protein
A–C · 401 Å² buried · 4 hydrogen bonds · protein-protein
B–C · 73 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

2ZDJ · Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2ZDJ · PDBe 2ZDJ

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