MolNFT v1 · #5594 · DNA
NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by saccharomyces cerevisiae telomere repeats
1EMQ · DNA (5'-D(*TP*GP*GP*TP*GP*GP*C)-3'): “NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by saccharomyces cerevisiae…”. Solution nmr. MolNFT v1 #5594 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1EMQ
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*GP*GP*TP*GP*GP*C)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*TP*GP*GP*TP*GP*GP*C)-3') | dna | 7 | — | — |
Interfaces
6 interfaces between chains.
- A–C · 328 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- B–D · 326 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- C–D · 323 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- A–B · 323 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- B–C · 86 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 1EMQ · NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1EMQ · PDBe 1EMQ
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