MolNFT v1 · #55850 · protein

Crystal structure of P. horikoshii TYW1

2YX0 · Radical SAM enzyme: “Crystal structure of P. horikoshii TYW1”. X-ray diffraction, 1 pocket (best druggability 0.79). MolNFT v1 #55850 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2YX0
Type: protein
Length: 324 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Radical SAM enzyme
UniProt: O59412
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Radical SAM enzyme	protein	324	38% helix, 20% strand	O59412

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	822	0.79	0.82	59	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2YX0 · Crystal structure of P. horikoshii TYW1 · the same entry in another collection · chain A against A, TM-score 1.00
O59412 · AlphaFold monomer V2.0 prediction for S-adenosyl-L-methionine- dependent tRNA… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59412
Elsewhere: RCSB PDB 2YX0 · PDBe 2YX0 · UniProt O59412

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.