MolNFT v1 · #5578 · protein
Rous sarcoma virus capsid protein: N-terminal domain
1EM9 · Gag polyprotein capsid protein P27: “Rous sarcoma virus capsid protein: N-terminal domain”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.28). MolNFT v1 #5578 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1EM9
- Type
- protein
- Length
- 288 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein capsid protein P27
- UniProt
- P03322
- Ligands
- MG
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 2 distinct chains · 63% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag polyprotein capsid protein P27 | protein | 147 | 62% helix, 4% strand | P03322 |
| B | Gag polyprotein capsid protein P27 | protein | 141 | 64% helix, 3% strand | P03322 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.28 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 321 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1EM9 · Rous sarcoma virus capsid protein: N-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03322
- Elsewhere: RCSB PDB 1EM9 · PDBe 1EM9 · UniProt P03322
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