MolNFT v1 · #55551 · protein
Apo gim-1 with 2MOL. crystal structures of pseudomonas aeruginosa gim-1: active site plasticity in metallo-beta-lactamases
2YNU · Gim-1 protein: “Apo gim-1 with 2MOL. crystal structures of pseudomonas aeruginosa gim-1: active site plasticity in…”. X-ray diffraction, 4 pockets (best druggability 0.60). MolNFT v1 #55551 on GenesisL1: 3D structure, binding sites…
- PDB
- 2YNU
- Type
- protein
- Length
- 425 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gim-1 protein
- UniProt
- Q704V1
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gim-1 protein | protein | 217 | 26% helix, 32% strand | Q704V1 |
| B | Gim-1 protein | protein | 208 | 27% helix, 33% strand | Q704V1 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 285 | 0.60 | 0.79 | 37 | empty |
| 2 | 164 | 0.46 | 0.76 | 22 | empty |
| 3 | 114 | 0.43 | 0.77 | 21 | empty |
| 4 | 52 | 0.32 | 0.77 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 822 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 2YNU · Apo GIM-1 with 2Mol. Crystal structures of Pseudomonas aeruginosa GIM-1: active site… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q704V1
- Elsewhere: RCSB PDB 2YNU · PDBe 2YNU · UniProt Q704V1
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